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At5g53840


Description : F-box/FBD/LRR-repeat protein At5g53840 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGQ3]


Gene families : OG_42_0000773 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000773_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g53840
Cluster HCCA clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
At1g78740 No alias RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IBU4] 0.03 Orthogroups_2024-Update
At4g13985 No alias FBD-associated F-box protein At4g13985... 0.04 Orthogroups_2024-Update
At5g53640 No alias CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like... 0.03 Orthogroups_2024-Update
Brara.I05077.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J01457.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006788 heme oxidation IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR013101 Leu-rich_rpt_2 163 188
IPR006566 FBD 364 406
IPR001810 F-box_dom 20 55
No external refs found!