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  5. Solyc03g118080

Solyc03g118080


Description : Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RA45_RICCO)


Gene families : OG_42_0010063 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010063_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g118080
Cluster HCCA clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Sopen03g036980 No alias PPR repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 289 315
IPR002885 Pentatricopeptide_repeat 318 348
IPR002885 Pentatricopeptide_repeat 156 180
IPR002885 Pentatricopeptide_repeat 391 418
IPR002885 Pentatricopeptide_repeat 353 379
IPR002885 Pentatricopeptide_repeat 217 246
IPR002885 Pentatricopeptide_repeat 181 211
No external refs found!