Description : DNA topoisomerase 1 beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ79]
Gene families : OG_42_0004287 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004287_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Arabidopsis release: At5g55310 | |
Cluster | HCCA clusters: Cluster_166 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Glyma.12G013600 | No alias | DNA topoisomerase I alpha | 0.03 | Orthogroups_2024-Update | |
Kfl00061_0370 | kfl00061_0370_v1.1 | (at5g55310 : 669.0) Encodes one of two Arabidopsis... | 0.02 | Orthogroups_2024-Update | |
LOC_Os08g05840 | No alias | DNA topoisomerase 1, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_120434g0010 | No alias | (at5g55300 : 828.0) Encodes a type-I DNA topoisomerase... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003917 | DNA topoisomerase type I activity | IEA | InterProScan predictions |
CC | GO:0005694 | chromosome | IEA | InterProScan predictions |
BP | GO:0006265 | DNA topological change | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000139 | Golgi membrane | IEP | Predicted GO |
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Predicted GO |
BP | GO:0000724 | double-strand break repair via homologous recombination | IEP | Predicted GO |
BP | GO:0000725 | recombinational repair | IEP | Predicted GO |
MF | GO:0003779 | actin binding | IEP | Predicted GO |
MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | Predicted GO |
MF | GO:0004386 | helicase activity | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005665 | RNA polymerase II, core complex | IEP | Predicted GO |
BP | GO:0006281 | DNA repair | IEP | Predicted GO |
BP | GO:0006302 | double-strand break repair | IEP | Predicted GO |
BP | GO:0006310 | DNA recombination | IEP | Predicted GO |
BP | GO:0006366 | transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006906 | vesicle fusion | IEP | Predicted GO |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
MF | GO:0008237 | metallopeptidase activity | IEP | Predicted GO |
MF | GO:0008565 | protein transporter activity | IEP | Predicted GO |
CC | GO:0009317 | acetyl-CoA carboxylase complex | IEP | Predicted GO |
BP | GO:0016050 | vesicle organization | IEP | Predicted GO |
MF | GO:0016421 | CoA carboxylase activity | IEP | Predicted GO |
BP | GO:0016458 | gene silencing | IEP | Predicted GO |
MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
CC | GO:0030880 | RNA polymerase complex | IEP | Predicted GO |
BP | GO:0031047 | gene silencing by RNA | IEP | Predicted GO |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Predicted GO |
BP | GO:0048280 | vesicle fusion with Golgi apparatus | IEP | Predicted GO |
BP | GO:0048284 | organelle fusion | IEP | Predicted GO |
BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | Predicted GO |
BP | GO:0061024 | membrane organization | IEP | Predicted GO |
BP | GO:0061025 | membrane fusion | IEP | Predicted GO |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
BP | GO:0090174 | organelle membrane fusion | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
No external refs found! |