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  5. At5g59910

At5g59910


Description : Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F2]


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g59910
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Bradi1g08860 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g47980 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g66380 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g23230 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Brara.F01827.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Brara.J01359.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Cre06.g264800 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g266750 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g268250 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g273850 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g274250 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g274750 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276900 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g504550 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g711750 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G141432 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G305027 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G306258 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G141600 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G141800 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G142100 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.12G065100 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.12G065200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G065400 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G078480.6 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update
MA_10428006g0010 No alias (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
Mp4g13450.1 No alias histone (H2B) 0.02 Orthogroups_2024-Update
Mp6g07010.1 No alias histone (H2B) 0.02 Orthogroups_2024-Update
PSME_00000376-RA No alias (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update
PSME_00037687-RA No alias (at3g45980 : 174.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
Solyc06g005390 No alias Histone H2B (AHRD V3.3 *** K4C323_SOLLC) 0.03 Orthogroups_2024-Update
Solyc11g066430 No alias histone H2B 0.03 Orthogroups_2024-Update
Sopen03g019890 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen06g032230 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen11g003790 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g003800 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen12g006850 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003856 3-dehydroquinate synthase activity IEP Predicted GO
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0004817 cysteine-tRNA ligase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0030289 protein phosphatase 4 complex IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 4 126
No external refs found!