1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g118800

Solyc03g118800


Description : Spliceosome associated protein, putative (AHRD V3.3 *** B9RRM5_RICCO)


Gene families : OG_42_0006215 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006215_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g118800
Cluster HCCA clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Glyma.12G240700 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
evm.model.tig00001029.19 No alias (at2g18510 : 282.0) embryo defective 2444 (emb2444);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
CC GO:0030904 retromer complex IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 114 184
IPR000504 RRM_dom 28 97
No external refs found!