At5g61170

Description : 40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]

Gene families : OG_42_0001908 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001908_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At5g61170
Cluster	HCCA clusters: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
153225	No alias	Ribosomal protein S19e family protein	0.02	Orthogroups_2024-Update
A4A49_38035	No alias	40s ribosomal protein s19-3	0.03	Orthogroups_2024-Update
Bradi4g08690	No alias	Ribosomal protein S19e family protein	0.03	Orthogroups_2024-Update
Brara.C02969.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Brara.C04231.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Cre02.g106600	No alias	Ribosomal protein S19e family protein	0.02	Orthogroups_2024-Update
Glyma.19G028700	No alias	Ribosomal protein S19e family protein	0.03	Orthogroups_2024-Update
HORVU5Hr1G052240.6	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
MA_10427917g0020	No alias	(at5g15520 : 163.0) Ribosomal protein S19e family...	0.03	Orthogroups_2024-Update
Potri.017G092200	No alias	Ribosomal protein S19e family protein	0.04	Orthogroups_2024-Update
Pp1s21_363V6	No alias	40s ribosomal protein s19	0.03	Orthogroups_2024-Update
Pp1s34_111V6	No alias	40s ribosomal protein s19	0.02	Orthogroups_2024-Update
Pp1s84_153V6	No alias	40s ribosomal protein s19	0.03	Orthogroups_2024-Update
Pp1s98_182V6	No alias	40s ribosomal protein s19	0.04	Orthogroups_2024-Update
Seita.9G575800.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Sobic.007G178600.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Solyc03g115360	No alias	40S ribosomal protein S19-like (AHRD V3.3 *** Q2VCJ6_SOLTU)	0.03	Orthogroups_2024-Update
Sopen03g034360	No alias	Ribosomal protein S19e	0.03	Orthogroups_2024-Update
evm.model.contig_3407.10	No alias	(at3g02080 : 155.0) Ribosomal protein S19e family...	0.04	Orthogroups_2024-Update
evm.model.tig00021017.6	No alias	(at3g02080 : 183.0) Ribosomal protein S19e family...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	Predicted GO
MF	GO:0004556	alpha-amylase activity	IEP	Predicted GO
MF	GO:0004664	prephenate dehydratase activity	IEP	Predicted GO
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Predicted GO
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predicted GO
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Predicted GO
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Predicted GO
MF	GO:0016160	amylase activity	IEP	Predicted GO
MF	GO:0016289	CoA hydrolase activity	IEP	Predicted GO
BP	GO:0016311	dephosphorylation	IEP	Predicted GO
MF	GO:0016790	thiolester hydrolase activity	IEP	Predicted GO
MF	GO:0016836	hydro-lyase activity	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0030258	lipid modification	IEP	Predicted GO
CC	GO:0043190	ATP-binding cassette (ABC) transporter complex	IEP	Predicted GO
CC	GO:0044459	plasma membrane part	IEP	Predicted GO
BP	GO:0046834	lipid phosphorylation	IEP	Predicted GO
BP	GO:0046854	phosphatidylinositol phosphorylation	IEP	Predicted GO
CC	GO:0098533	ATPase dependent transmembrane transport complex	IEP	Predicted GO
CC	GO:0098797	plasma membrane protein complex	IEP	Predicted GO
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Predicted GO
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Predicted GO
CC	GO:1902495	transmembrane transporter complex	IEP	Predicted GO
CC	GO:1904949	ATPase complex	IEP	Predicted GO
CC	GO:1990351	transporter complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001266	Ribosomal_S19e	6	140

External Links

No external refs found!

At5g61170

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation