Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0B2QPN9_GLYSO)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc03g119120 | |
Cluster | HCCA clusters: Cluster_185 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
98955 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
At3g03580 | No alias | Pentatricopeptide repeat-containing protein At3g03580... | 0.03 | Orthogroups_2024-Update | |
At4g14170 | No alias | Pentatricopeptide repeat-containing protein At4g14170... | 0.04 | Orthogroups_2024-Update | |
Glyma.10G190600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G024180.8 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
PSME_00005384-RA | No alias | (at3g12770 : 639.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
Potri.001G322100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.002G014800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.006G105700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.006G181800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.016G053500 | No alias | mitochondrial RNAediting factor 1 | 0.02 | Orthogroups_2024-Update | |
Seita.4G168200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.5G295700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sopen04g036510 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0005244 | voltage-gated ion channel activity | IEP | Predicted GO |
MF | GO:0005247 | voltage-gated chloride channel activity | IEP | Predicted GO |
MF | GO:0005253 | anion channel activity | IEP | Predicted GO |
MF | GO:0005254 | chloride channel activity | IEP | Predicted GO |
BP | GO:0006605 | protein targeting | IEP | Predicted GO |
BP | GO:0006612 | protein targeting to membrane | IEP | Predicted GO |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Predicted GO |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Predicted GO |
BP | GO:0006821 | chloride transport | IEP | Predicted GO |
MF | GO:0008308 | voltage-gated anion channel activity | IEP | Predicted GO |
MF | GO:0008312 | 7S RNA binding | IEP | Predicted GO |
MF | GO:0008509 | anion transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015103 | inorganic anion transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015108 | chloride transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015698 | inorganic anion transport | IEP | Predicted GO |
MF | GO:0022832 | voltage-gated channel activity | IEP | Predicted GO |
MF | GO:0022836 | gated channel activity | IEP | Predicted GO |
MF | GO:0022839 | ion gated channel activity | IEP | Predicted GO |
BP | GO:0033365 | protein localization to organelle | IEP | Predicted GO |
BP | GO:0034613 | cellular protein localization | IEP | Predicted GO |
BP | GO:0045047 | protein targeting to ER | IEP | Predicted GO |
CC | GO:0048500 | signal recognition particle | IEP | Predicted GO |
BP | GO:0070727 | cellular macromolecule localization | IEP | Predicted GO |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Predicted GO |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | Predicted GO |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Predicted GO |
BP | GO:0072657 | protein localization to membrane | IEP | Predicted GO |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 525 | 556 |
IPR032867 | DYW_dom | 631 | 754 |
IPR002885 | Pentatricopeptide_repeat | 297 | 327 |
IPR002885 | Pentatricopeptide_repeat | 266 | 293 |
IPR002885 | Pentatricopeptide_repeat | 235 | 259 |
IPR002885 | Pentatricopeptide_repeat | 111 | 139 |
IPR002885 | Pentatricopeptide_repeat | 173 | 196 |
IPR002885 | Pentatricopeptide_repeat | 55 | 79 |
IPR002885 | Pentatricopeptide_repeat | 204 | 230 |
IPR002885 | Pentatricopeptide_repeat | 80 | 109 |
IPR002885 | Pentatricopeptide_repeat | 142 | 169 |
IPR002885 | Pentatricopeptide_repeat | 357 | 401 |
IPR002885 | Pentatricopeptide_repeat | 457 | 504 |
No external refs found! |