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  5. At5g64390

At5g64390


Description : RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KDM9]


Gene families : OG_42_0000643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g64390
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
At2g03110 No alias At2g03110 [Source:UniProtKB/TrEMBL;Acc:Q6NLG5] 0.04 Orthogroups_2024-Update
Bradi4g34220 No alias RNA-binding KH domain-containing protein 0.04 Orthogroups_2024-Update
MA_201979g0010 No alias (at5g64390 : 81.3) encodes a K homology (KH)... 0.03 Orthogroups_2024-Update
Seita.5G004600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc02g067210 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 777 840
IPR004088 KH_dom_type_1 50 101
IPR004088 KH_dom_type_1 153 217
IPR004088 KH_dom_type_1 543 611
IPR004088 KH_dom_type_1 454 505
No external refs found!