1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. At5g65560

At5g65560


Description : Pentatricopeptide repeat-containing protein At5g65560 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL9]


Gene families : OG_42_0010390 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010390_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g65560
Cluster HCCA clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
Bradi3g47150 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 747 807
IPR002885 Pentatricopeptide_repeat 530 578
IPR002885 Pentatricopeptide_repeat 391 440
IPR002885 Pentatricopeptide_repeat 635 682
IPR002885 Pentatricopeptide_repeat 866 910
IPR002885 Pentatricopeptide_repeat 287 334
IPR002885 Pentatricopeptide_repeat 185 230
IPR002885 Pentatricopeptide_repeat 460 509
IPR002885 Pentatricopeptide_repeat 606 632
IPR002885 Pentatricopeptide_repeat 248 280
IPR002885 Pentatricopeptide_repeat 353 384
No external refs found!