1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g119330

Solyc03g119330


Description : AMSH-like ubiquitin thioesterase 1 (AHRD V3.3 *** A0A0B2QJP6_GLYSO)


Gene families : OG_42_0001868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001868_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g119330
Cluster HCCA clusters: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
GRMZM5G835530 No alias associated molecule with the SH3 domain of STAM 3 0.03 Orthogroups_2024-Update
Glyma.07G093100 No alias associated molecule with the SH3 domain of STAM 1 0.08 Orthogroups_2024-Update
Glyma.09G183100 No alias associated molecule with the SH3 domain of STAM 1 0.03 Orthogroups_2024-Update
MA_106719g0010 No alias (at4g16144 : 352.0) Encodes AMSH3, a deubiquitinating... 0.03 Orthogroups_2024-Update
Potri.010G141100 No alias associated molecule with the SH3 domain of STAM 3 0.03 Orthogroups_2024-Update
Seita.5G159400.1 No alias deubiquitinase *(AMSH) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR015063 USP8_dimer 16 101
IPR000555 JAMM/MPN+_dom 340 445
No external refs found!