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  5. Solyc01g028800

Solyc01g028800


Description : RNA binding protein, putative (AHRD V3.3 *** B9SBN7_RICCO)


Gene families : OG_42_0001160 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001160_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g028800
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Sobic.008G098700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen04g029190 No alias Pumilio-family RNA binding repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009539 photosystem II reaction center IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 502 533
IPR001313 Pumilio_RNA-bd_rpt 460 494
IPR001313 Pumilio_RNA-bd_rpt 609 632
IPR001313 Pumilio_RNA-bd_rpt 684 706
IPR001313 Pumilio_RNA-bd_rpt 536 570
IPR001313 Pumilio_RNA-bd_rpt 574 594
No external refs found!