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  5. Solyc01g028860

Solyc01g028860


Description : evolutionarily conserved C-terminal region 2 (AHRD V3.3 *** AT3G13460.1)


Gene families : OG_42_0000396 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g028860
Cluster HCCA clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
At1g27960 No alias At1g27960 [Source:UniProtKB/TrEMBL;Acc:Q500V8] 0.03 Orthogroups_2024-Update
Bradi1g74560 No alias evolutionarily conserved C-terminal region 2 0.03 Orthogroups_2024-Update
Glyma.07G233400 No alias evolutionarily conserved C-terminal region 7 0.02 Orthogroups_2024-Update
Sopen01g016960 No alias YT521-B-like domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007275 YTH_domain 447 584
No external refs found!