1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g121250

Solyc03g121250


Description : 3'-5' exonuclease domain-containing family protein (AHRD V3.3 *** B9ING4_POPTR)


Gene families : OG_42_0003546 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003546_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g121250
Cluster HCCA clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Seita.5G204400.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0006139 nucleobase-containing compound metabolic process IEA InterProScan predictions
MF GO:0008408 3'-5' exonuclease activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002562 3'-5'_exonuclease_dom 2 167
IPR004088 KH_dom_type_1 221 279
No external refs found!