Solyc03g123500

Description : GCC box binding protein C.4

Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc03g123500
Cluster	HCCA clusters: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
A4A49_20932	No alias	ethylene-responsive transcription factor erf114	0.03	Orthogroups_2024-Update
At5g61600	No alias	Ethylene-responsive transcription factor ERF104...	0.03	Orthogroups_2024-Update
Brara.C01790.1	No alias	subgroup ERF-III transcription factor	0.03	Orthogroups_2024-Update
Brara.E02487.1	No alias	subgroup ERF-VII transcription factor & transcription...	0.03	Orthogroups_2024-Update
Brara.G01933.1	No alias	transcription factor *(CRF) & subgroup ERF-VI...	0.03	Orthogroups_2024-Update
Brara.I01413.1	No alias	subgroup ERF-III transcription factor	0.03	Orthogroups_2024-Update
Brara.I03088.1	No alias	transcription factor *(CRF) & subgroup ERF-VI...	0.03	Orthogroups_2024-Update
GRMZM2G057386	No alias	ethylene responsive element binding factor 5	0.06	Orthogroups_2024-Update
GRMZM2G060876	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
GRMZM2G085678	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Glyma.03G263700	No alias	related to AP2 12	0.03	Orthogroups_2024-Update
Glyma.04G251400	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.07G250100	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Glyma.11G018100	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.20G070000	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
HORVU6Hr1G074970.1	No alias	subgroup ERF-I transcription factor	0.02	Orthogroups_2024-Update
LOC_Os03g08460	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os03g08500	No alias	AP2 domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os07g22730	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os09g39850	No alias	AP2 domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os11g06770	No alias	ethylene-responsive transcription factor ERF110,...	0.04	Orthogroups_2024-Update
MA_121581g0010	No alias	(at1g22190 : 103.0) Integrase-type DNA-binding...	0.04	Orthogroups_2024-Update
MA_184464g0010	No alias	(at4g17500 : 88.2) Encodes a member of the ERF (ethylene...	0.03	Orthogroups_2024-Update
MA_203191g0010	No alias	(at1g28360 : 85.9) encodes a member of the ERF (ethylene...	0.02	Orthogroups_2024-Update
MA_2446g0010	No alias	(at2g20880 : 136.0) Integrase-type DNA-binding...	0.02	Orthogroups_2024-Update
MA_329325g0010	No alias	(at4g17500 : 94.0) Encodes a member of the ERF (ethylene...	0.02	Orthogroups_2024-Update
MA_426919g0010	No alias	(at1g19210 : 109.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
MA_88g0020	No alias	(at1g74930 : 118.0) encodes a member of the DREB...	0.02	Orthogroups_2024-Update
MA_891091g0010	No alias	(at4g17500 : 92.0) Encodes a member of the ERF (ethylene...	0.03	Orthogroups_2024-Update
PSME_00005186-RA	No alias	(at4g17500 : 141.0) Encodes a member of the ERF...	0.03	Orthogroups_2024-Update
PSME_00022946-RA	No alias	(at5g61890 : 105.0) encodes a member of the ERF...	0.02	Orthogroups_2024-Update
PSME_00034722-RA	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
PSME_00054258-RA	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
PSME_00056380-RA	No alias	(at4g17500 : 89.7) Encodes a member of the ERF (ethylene...	0.02	Orthogroups_2024-Update
Potri.002G039300	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Potri.003G161000	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Potri.003G179900	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Potri.008G120100	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Potri.010G072600	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Potri.012G032900	No alias	cytokinin response factor 4	0.02	Orthogroups_2024-Update
Potri.012G134100	No alias	C-repeat-binding factor 4	0.03	Orthogroups_2024-Update
Pp1s19_272V6	No alias	ap2 erf domain-containing transcription factor	0.03	Orthogroups_2024-Update
Pp1s276_3V6	No alias	transcriptional factor	0.03	Orthogroups_2024-Update
Pp1s293_53V6	No alias	ap2 erf domain-containing transcription factor	0.03	Orthogroups_2024-Update
Pp1s487_24V6	No alias	ap2 erf domain-containing transcription factor	0.03	Orthogroups_2024-Update
Seita.1G257300.1	No alias	subgroup ERF-IX transcription factor	0.02	Orthogroups_2024-Update
Seita.2G138400.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
Seita.2G156200.1	No alias	subgroup ERF-IX transcription factor	0.02	Orthogroups_2024-Update
Seita.3G192000.1	No alias	subgroup ERF-VIII transcription factor	0.06	Orthogroups_2024-Update
Seita.8G237900.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.001G378900.1	No alias	subgroup ERF-IV/DREB2 transcription factor	0.03	Orthogroups_2024-Update
Sobic.004G295500.1	No alias	subgroup ERF-III transcription factor	0.04	Orthogroups_2024-Update
Sobic.006G168000.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
Sobic.007G181500.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.009G170800.1	No alias	subgroup ERF-IV/DREB2 transcription factor	0.03	Orthogroups_2024-Update
Solyc02g077370	No alias	Ethylene Response Factor C.5	0.03	Orthogroups_2024-Update
Solyc11g042560	No alias	Ethylene-responsive transcription factor ERF021 family...	0.03	Orthogroups_2024-Update
Sopen03g024350	No alias	AP2 domain	0.03	Orthogroups_2024-Update
Sopen03g041270	No alias	AP2 domain	0.03	Orthogroups_2024-Update
Sopen04g027740	No alias	AP2 domain	0.03	Orthogroups_2024-Update
Sopen05g030600	No alias	AP2 domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
MF	GO:0005543	phospholipid binding	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006813	potassium ion transport	IEP	Predicted GO
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0031072	heat shock protein binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
MF	GO:0045735	nutrient reservoir activity	IEP	Predicted GO
MF	GO:0051082	unfolded protein binding	IEP	Predicted GO
BP	GO:0071805	potassium ion transmembrane transport	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	116	162

External Links

No external refs found!

Solyc03g123500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation