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  5. Solyc03g123680

Solyc03g123680


Description : RING/U-box superfamily protein (AHRD V3.3 *** AT1G72310.1)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g123680
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
A4A49_27114 No alias ring-h2 finger protein atl54 0.03 Orthogroups_2024-Update
A4A49_29197 No alias ring-h2 finger protein atl73 0.03 Orthogroups_2024-Update
At2g17450 No alias Probable E3 ubiquitin-protein ligase ATL44... 0.02 Orthogroups_2024-Update
At3g10910 No alias RING-H2 finger protein ATL72... 0.04 Orthogroups_2024-Update
At3g11110 No alias RING-H2 finger protein ATL66... 0.03 Orthogroups_2024-Update
At4g17245 No alias AT4g17240/dl4655c [Source:UniProtKB/TrEMBL;Acc:Q940N3] 0.03 Orthogroups_2024-Update
At5g01880 No alias RING-H2 finger protein ATL74... 0.07 Orthogroups_2024-Update
Bradi3g45270 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.A02910.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.B00007.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C03025.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.D02285.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F01484.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Brara.F03530.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.G03117.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H00317.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.H01260.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Glyma.05G188900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G271100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G056000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G010400 No alias hypoxia-responsive family protein / zinc finger... 0.02 Orthogroups_2024-Update
LOC_Os04g50100 No alias RING-H2 finger protein ATL5G, putative, expressed 0.03 Orthogroups_2024-Update
MA_31462g0010 No alias (at1g49220 : 101.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_3380g0010 No alias (at1g49230 : 140.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
Mp2g11860.1 No alias RING-H2-class E3 ligase 0.03 Orthogroups_2024-Update
PSME_00022170-RA No alias (at1g53820 : 134.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00024216-RA No alias (at1g49230 : 130.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.001G032300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G244800 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.007G111900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G206300 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
Pp1s257_3V6 No alias ac009177_16 ring-h2 zinc finger protein atl6 0.03 Orthogroups_2024-Update
Seita.1G203900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.1G306600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G392900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G170300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G071000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Solyc11g010330 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc11g066510 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G27940.1) 0.04 Orthogroups_2024-Update
Sopen03g041450 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen12g031590 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 98 141
No external refs found!