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  5. Solyc04g005020

Solyc04g005020


Description : Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** A0A061FTT2_THECC)


Gene families : OG_42_0000343 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000343_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g005020
Cluster HCCA clusters: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
At1g49450 No alias F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2] 0.03 Orthogroups_2024-Update
At2g26490 No alias Protein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716] 0.03 Orthogroups_2024-Update
Brara.H01208.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G099023 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G084700 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G185900 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G356400 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G083090.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g52870 No alias WD-40 repeat family protein, putative, expressed 0.04 Orthogroups_2024-Update
MA_10429180g0010 No alias (at1g24130 : 233.0) Transducin/WD40 repeat-like... 0.03 Orthogroups_2024-Update
MA_137730g0010 No alias (at1g49450 : 217.0) Transducin/WD40 repeat-like... 0.03 Orthogroups_2024-Update
PSME_00055600-RA No alias (at1g49450 : 222.0) Transducin/WD40 repeat-like... 0.03 Orthogroups_2024-Update
Potri.006G239600 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s39_313V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.4G105600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G449800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G123000.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Sobic.008G150400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g030180 No alias WD domain, G-beta repeat 0.03 Orthogroups_2024-Update
Sopen02g034840 No alias WD domain, G-beta repeat 0.03 Orthogroups_2024-Update
Sopen05g002300 No alias WD domain, G-beta repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 244 275
IPR001680 WD40_repeat 292 323
IPR001680 WD40_repeat 203 233
IPR001680 WD40_repeat 80 159
IPR001680 WD40_repeat 328 363
IPR001680 WD40_repeat 372 422
No external refs found!