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  5. Solyc04g007510

Solyc04g007510


Description : ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9SJY8_RICCO)


Gene families : OG_42_0000651 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g007510
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
173775 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Cre03.g171650 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Glyma.20G122600 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
Potri.004G222900 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
evm.model.tig00021094.26 No alias (at2g35920 : 157.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update
evm.model.tig00021127.75 No alias (at2g35920 : 181.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004358 glutamate N-acetyltransferase activity IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010038 response to metal ion IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016556 mRNA modification IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:0080009 mRNA methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR014720 dsRBD_dom 1097 1159
IPR007502 Helicase-assoc_dom 753 841
IPR001650 Helicase_C 557 689
IPR011545 DEAD/DEAH_box_helicase_dom 301 452
IPR011709 DUF1605 880 990
No external refs found!