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  5. Solyc04g007620

Solyc04g007620


Description : LOW QUALITY:mediator of RNA polymerase II transcription subunit (AHRD V3.3 *** AT2G01300.1)


Gene families : OG_42_0001795 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001795_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g007620
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
A4A49_07063 No alias hypothetical protein 0.05 Orthogroups_2024-Update
A4A49_23005 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Brara.F01019.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F03492.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.10G265100 No alias Function unknown 0.03 Orthogroups_2024-Update
MA_10245g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_10430097g0010 No alias (at2g01300 : 81.3) unknown protein; BEST Arabidopsis... 0.03 Orthogroups_2024-Update
MA_46293g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_8720276g0010 No alias (at2g01300 : 80.1) unknown protein; BEST Arabidopsis... 0.02 Orthogroups_2024-Update
Solyc05g008360 No alias No description available 0.03 Orthogroups_2024-Update
Sopen02g035880 No alias hypothetical protein 0.05 Orthogroups_2024-Update
Sopen04g002700 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006570 tyrosine metabolic process IEP Predicted GO
BP GO:0006571 tyrosine biosynthetic process IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
BP GO:0006879 cellular iron ion homeostasis IEP Predicted GO
MF GO:0008199 ferric iron binding IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0046916 cellular transition metal ion homeostasis IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055072 iron ion homeostasis IEP Predicted GO
BP GO:0055076 transition metal ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!