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  5. Solyc04g008840

Solyc04g008840


Description : Protein FRIGIDA, putative (AHRD V3.3 *** B9SG32_RICCO)


Gene families : OG_42_0002298 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002298_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g008840
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
34543 No alias FRIGIDA-like protein 0.02 Orthogroups_2024-Update
Glyma.05G101800 No alias FRIGIDA-like protein 0.03 Orthogroups_2024-Update
Sobic.002G361400.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0016987 sigma factor activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR012474 Frigida 163 446
No external refs found!