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  5. Solyc04g009000

Solyc04g009000


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XCD9_CYNCS)


Gene families : OG_42_0009146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g009000
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Glyma.11G131400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G055700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.7G103600.1 No alias RNA editing factor *(SLO2) 0.02 Orthogroups_2024-Update
Sopen04g004180 No alias PPR repeat 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 121 149
IPR002885 Pentatricopeptide_repeat 89 115
IPR002885 Pentatricopeptide_repeat 293 320
IPR002885 Pentatricopeptide_repeat 61 87
IPR002885 Pentatricopeptide_repeat 433 458
IPR002885 Pentatricopeptide_repeat 533 557
IPR002885 Pentatricopeptide_repeat 459 505
IPR002885 Pentatricopeptide_repeat 219 266
IPR002885 Pentatricopeptide_repeat 352 399
IPR032867 DYW_dom 632 679
No external refs found!