Solyc04g009660

Description : LOW QUALITY:Nbs-lrr resistance protein (AHRD V3.3 *** A0A061FZT5_THECC)

Gene families : OG_42_0000068 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc04g009660
Cluster	HCCA clusters: Cluster_165

Target	Alias	Description	ECC score	Gene Family Method
A4A49_41267	No alias	disease resistance protein rpp13	0.03	Orthogroups_2024-Update
At3g46710	No alias	Putative disease resistance RPP13-like protein 2...	0.04	Orthogroups_2024-Update
At3g46730	No alias	Putative disease resistance RPP13-like protein 3...	0.03	Orthogroups_2024-Update
Bradi3g22538	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Brara.B03684.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.I01586.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Glyma.01G010500	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Glyma.08G305400	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Glyma.18G082300	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Glyma.18G082400	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Glyma.18G087700	No alias	NB-ARC domain-containing disease resistance protein	0.06	Orthogroups_2024-Update
Glyma.18G093333	No alias	NB-ARC domain-containing disease resistance protein	0.04	Orthogroups_2024-Update
Glyma.20G041300	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.03	Orthogroups_2024-Update
HORVU1Hr1G002620.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU2Hr1G098100.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU7Hr1G008210.5	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os02g09790	No alias	disease resistance protein RPM1, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g22460	No alias	disease resistance protein RPM1, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os11g12300	No alias	NBS-LRR disease resistance protein, putative, expressed	0.03	Orthogroups_2024-Update
Potri.003G099150	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T130000	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Seita.1G126800.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Seita.2G128800.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.3G350300.1	No alias	Unknown function	0.07	Orthogroups_2024-Update
Seita.7G187000.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.005G095600.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sopen04g004270	No alias	NB-ARC domain	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0004019	adenylosuccinate synthase activity	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Predicted GO
MF	GO:0016843	amine-lyase activity	IEP	Predicted GO
MF	GO:0016844	strictosidine synthase activity	IEP	Predicted GO
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predicted GO
CC	GO:0033588	Elongator holoenzyme complex	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
MF	GO:1901681	sulfur compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	158	437

External Links

No external refs found!

Solyc04g009660

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation