1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g009990

Solyc04g009990


Description : Transcription factor jumonji family protein (AHRD V3.3 *** A0A072VNF4_MEDTR)


Gene families : OG_42_0001408 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001408_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g009990
Cluster HCCA clusters: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
A4A49_06428 No alias putative lysine-specific demethylase jmj16 0.03 Orthogroups_2024-Update
Bradi3g39457 No alias Transcription factor jumonji (jmj) family protein / zinc... 0.03 Orthogroups_2024-Update
Potri.013G046700 No alias Transcription factor jumonji (jmj) family protein / zinc... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0045132 meiotic chromosome segregation IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
BP GO:0098813 nuclear chromosome segregation IEP Predicted GO
BP GO:1903046 meiotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR003347 JmjC_dom 366 482
IPR003888 FYrich_N 976 1018
IPR004198 Znf_C5HC2 589 640
IPR003889 FYrich_C 1025 1109
IPR003349 JmjN 140 173
No external refs found!