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  5. Solyc04g011580

Solyc04g011580


Description : Pumilio, putative (AHRD V3.3 *** B9SDY2_RICCO)


Gene families : OG_42_0001049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g011580
Cluster HCCA clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Bradi2g39240 No alias pumilio 1 0.02 Orthogroups_2024-Update
Glyma.11G136700 No alias pumilio 2 0.03 Orthogroups_2024-Update
HORVU1Hr1G004200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU3Hr1G115020.1 No alias Unknown function 0.04 Orthogroups_2024-Update
MA_42218g0010 No alias (at2g29200 : 657.0) Encodes a member of the Arabidopsis... 0.02 Orthogroups_2024-Update
Potri.009G034900 No alias pumilio 3 0.03 Orthogroups_2024-Update
Sopen04g005760 No alias Nucleic acid binding protein NABP 0.08 Orthogroups_2024-Update
Sopen06g001650 No alias Nucleic acid binding protein NABP 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
MF GO:0004150 dihydroneopterin aldolase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004871 obsolete signal transducer activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
CC GO:0017053 transcriptional repressor complex IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
CC GO:0070176 DRM complex IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
CC GO:0090568 nuclear transcriptional repressor complex IEP Predicted GO
CC GO:0090571 RNA polymerase II transcription repressor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012940 NABP 324 416
IPR012940 NABP 412 697
IPR001313 Pumilio_RNA-bd_rpt 698 731
IPR001313 Pumilio_RNA-bd_rpt 815 839
IPR001313 Pumilio_RNA-bd_rpt 771 801
IPR001313 Pumilio_RNA-bd_rpt 737 766
IPR001313 Pumilio_RNA-bd_rpt 844 875
IPR001313 Pumilio_RNA-bd_rpt 916 948
IPR001313 Pumilio_RNA-bd_rpt 965 991
IPR001313 Pumilio_RNA-bd_rpt 879 913
No external refs found!