- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H9T6_POPTR)
Gene families : OG_42_0007642 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007642_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc04g015950 | |
| Cluster | HCCA clusters: Cluster_205 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi1g54007 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| PSME_00037031-RA | No alias | (at2g41720 : 628.0) EMBRYO DEFECTIVE 2654 (EMB2654);... | 0.03 | Orthogroups_2024-Update | |
| Seita.2G082900.1 | No alias | trans-splicing factor *(EMB2654) | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003747 | translation release factor activity | IEP | Predicted GO |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| CC | GO:0005694 | chromosome | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
| BP | GO:0006415 | translational termination | IEP | Predicted GO |
| MF | GO:0008079 | translation termination factor activity | IEP | Predicted GO |
| MF | GO:0016149 | translation release factor activity, codon specific | IEP | Predicted GO |
| MF | GO:0016790 | thiolester hydrolase activity | IEP | Predicted GO |
| MF | GO:0016987 | sigma factor activity | IEP | Predicted GO |
| BP | GO:0022411 | cellular component disassembly | IEP | Predicted GO |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043624 | cellular protein complex disassembly | IEP | Predicted GO |
| BP | GO:0051205 | protein insertion into membrane | IEP | Predicted GO |
| BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
| BP | GO:0072657 | protein localization to membrane | IEP | Predicted GO |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 597 | 625 |
| IPR002885 | Pentatricopeptide_repeat | 314 | 341 |
| IPR002885 | Pentatricopeptide_repeat | 627 | 674 |
| IPR002885 | Pentatricopeptide_repeat | 347 | 395 |
| IPR002885 | Pentatricopeptide_repeat | 240 | 287 |
| IPR002885 | Pentatricopeptide_repeat | 523 | 571 |
| IPR002885 | Pentatricopeptide_repeat | 160 | 203 |
| IPR002885 | Pentatricopeptide_repeat | 405 | 467 |
| IPR002885 | Pentatricopeptide_repeat | 760 | 811 |
| No external refs found! |