Solyc04g026100

Description : Ribosomal protein S16 (AHRD V3.3 *** A9P8S1_POPTR)

Gene families : OG_42_0002098 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002098_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc04g026100
Cluster	HCCA clusters: Cluster_102

Target	Alias	Description	ECC score	Gene Family Method
138369	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.09	Orthogroups_2024-Update
A4A49_19998	No alias	40s ribosomal protein s16	0.09	Orthogroups_2024-Update
A4A49_23464	No alias	40s ribosomal protein s16	0.07	Orthogroups_2024-Update
A4A49_46097	No alias	40s ribosomal protein s16	0.09	Orthogroups_2024-Update
Brara.A03778.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Brara.C00820.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Brara.C03046.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Brara.E03459.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Brara.J01727.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Cre13.g573351	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.07	Orthogroups_2024-Update
GRMZM2G353103	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.08	Orthogroups_2024-Update
GRMZM2G377797	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.06	Orthogroups_2024-Update
GRMZM2G427014	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.07	Orthogroups_2024-Update
Glyma.02G103600	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.05	Orthogroups_2024-Update
Glyma.05G241200	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.04	Orthogroups_2024-Update
Glyma.08G048200	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.09	Orthogroups_2024-Update
HORVU4Hr1G023530.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
HORVU4Hr1G023570.2	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
HORVU5Hr1G045620.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Kfl00461_0050	kfl00461_0050_v1.1	(p46293\|rs16_goshi : 254.0) 40S ribosomal protein S16 -...	0.05	Orthogroups_2024-Update
LOC_Os12g03090	No alias	ribosomal protein, putative, expressed	0.04	Orthogroups_2024-Update
Mp1g07720.1	No alias	component RPS16 of SSU proteome	0.04	Orthogroups_2024-Update
Mp1g14290.1	No alias	component RPS16 of SSU proteome	0.12	Orthogroups_2024-Update
Potri.001G304700	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.08	Orthogroups_2024-Update
Potri.008G150000	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.05	Orthogroups_2024-Update
Pp1s17_377V6	No alias	40s ribosomal protein s16	0.08	Orthogroups_2024-Update
Pp1s199_17V6	No alias	40s ribosomal protein s16	0.03	Orthogroups_2024-Update
Pp1s225_61V6	No alias	40s ribosomal protein s16	0.03	Orthogroups_2024-Update
Pp1s228_28V6	No alias	40s ribosomal protein s16	0.04	Orthogroups_2024-Update
Pp1s290_44V6	No alias	40s ribosomal protein s16	0.02	Orthogroups_2024-Update
Seita.7G306900.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Sobic.005G019700.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.16	Orthogroups_2024-Update
Sobic.008G021100.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Sopen01g030490	No alias	Ribosomal protein S9/S16	0.03	Orthogroups_2024-Update
Sopen04g014030	No alias	Ribosomal protein S9/S16	0.19	Orthogroups_2024-Update
Sopen05g001690	No alias	Ribosomal protein S9/S16	0.05	Orthogroups_2024-Update
evm.model.contig_435.17	No alias	(at2g09990 : 160.0) Ribosomal protein S5 domain 2-like...	0.16	Orthogroups_2024-Update
evm.model.tig00000123.14	No alias	(at2g09990 : 175.0) Ribosomal protein S5 domain 2-like...	0.1	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005737	cytoplasm	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006183	GTP biosynthetic process	IEP	Predicted GO
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006228	UTP biosynthetic process	IEP	Predicted GO
BP	GO:0006241	CTP biosynthetic process	IEP	Predicted GO
BP	GO:0006886	intracellular protein transport	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
BP	GO:0009147	pyrimidine nucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009148	pyrimidine nucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009163	nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0009208	pyrimidine ribonucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009209	pyrimidine ribonucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	Predicted GO
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0017016	Ras GTPase binding	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
BP	GO:0046036	CTP metabolic process	IEP	Predicted GO
BP	GO:0046039	GTP metabolic process	IEP	Predicted GO
BP	GO:0046051	UTP metabolic process	IEP	Predicted GO
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046132	pyrimidine ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046134	pyrimidine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000754	Ribosomal_S9	15	147

External Links

No external refs found!

Solyc04g026100

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation