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  5. Solyc04g049920

Solyc04g049920


Description : RNA-binding region-containing protein, putative (AHRD V3.3 *** B9SD37_RICCO)


Gene families : OG_42_0000483 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000483_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g049920
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
At1g78260 No alias At1g78260 [Source:UniProtKB/TrEMBL;Acc:Q8LF90] 0.03 Orthogroups_2024-Update
Brara.G02114.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G073700 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Potri.018G137100 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Seita.4G091000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g074310 No alias RNA-binding family protein, putative (AHRD V3.3 *-*... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 14 71
No external refs found!