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  5. Solyc04g050550

Solyc04g050550


Description : Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9T3S4_RICCO)


Gene families : OG_42_0009590 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009590_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g050550
Cluster HCCA clusters: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Bradi3g60300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016987 sigma factor activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 399 430
IPR002885 Pentatricopeptide_repeat 302 330
IPR002885 Pentatricopeptide_repeat 615 643
IPR002885 Pentatricopeptide_repeat 436 483
IPR002885 Pentatricopeptide_repeat 332 376
IPR002885 Pentatricopeptide_repeat 505 554
No external refs found!