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  5. Solyc04g054290

Solyc04g054290


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HFU9_POPTR)


Gene families : OG_42_0009240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g054290
Cluster HCCA clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Bradi1g07090 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
Brara.I04605.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G471348 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Sobic.001G072900.2 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 619 647
IPR002885 Pentatricopeptide_repeat 244 272
IPR002885 Pentatricopeptide_repeat 214 242
IPR002885 Pentatricopeptide_repeat 51 76
IPR002885 Pentatricopeptide_repeat 556 577
IPR002885 Pentatricopeptide_repeat 81 105
IPR032867 DYW_dom 653 745
IPR002885 Pentatricopeptide_repeat 479 525
IPR002885 Pentatricopeptide_repeat 109 157
IPR002885 Pentatricopeptide_repeat 377 423
No external refs found!