Solyc04g054330

Description : RING/FYVE/PHD zinc finger superfamily protein (AHRD V3.3 *** AT2G22120.2)

Gene families : OG_42_0001347 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001347_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc04g054330
Cluster	HCCA clusters: Cluster_225

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bradi3g02970	No alias	RING/FYVE/PHD zinc finger superfamily protein	0.06	Orthogroups_2024-Update
Cre12.g517850	No alias	RING/FYVE/PHD zinc finger superfamily protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
CC	GO:0044432	endoplasmic reticulum part	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011016	Znf_RING-CH	36	83

External Links

No external refs found!