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  5. Solyc04g054370

Solyc04g054370


Description : RING/U-box superfamily protein (AHRD V3.3 *-* AT5G41400.1)


Gene families : OG_42_0000206 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g054370
Cluster HCCA clusters: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
A4A49_00047 No alias e3 ubiquitin-protein ligase rha2a 0.03 Orthogroups_2024-Update
A4A49_03376 No alias hypothetical protein 0.01 Orthogroups_2024-Update
At3g61460 No alias BRH1 RING finger protein [Source:UniProtKB/TrEMBL;Acc:Q9XF92] 0.03 Orthogroups_2024-Update
Brara.C02675.1 No alias E3 ubiquitin ligase *(BRH) 0.03 Orthogroups_2024-Update
Brara.C02915.1 No alias E3 ubiquitin ligase *(BRH) 0.03 Orthogroups_2024-Update
Brara.D01801.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G00433.1 No alias E3 ubiquitin ligase *(XERICO) 0.03 Orthogroups_2024-Update
Brara.I02341.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G134023 No alias brassinosteroid-responsive RING-H2 0.04 Orthogroups_2024-Update
Glyma.01G093800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G210000 No alias brassinosteroid-responsive RING-H2 0.02 Orthogroups_2024-Update
Glyma.11G243400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G034100 No alias brassinosteroid-responsive RING-H2 0.03 Orthogroups_2024-Update
Glyma.18G013800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G235600 No alias brassinosteroid-responsive RING-H2 0.04 Orthogroups_2024-Update
LOC_Os08g38460 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_10433991g0020 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Mp4g04600.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Potri.007G086100 No alias receptor homology region transmembrane domain ring H2... 0.03 Orthogroups_2024-Update
Potri.010G133700 No alias brassinosteroid-responsive RING-H2 0.04 Orthogroups_2024-Update
Seita.1G273100.1 No alias E3 ubiquitin ligase *(BRH) 0.04 Orthogroups_2024-Update
Seita.4G006300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.6G056400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G025900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G239200.2 No alias E3 ubiquitin ligase *(XERICO) 0.02 Orthogroups_2024-Update
Sobic.004G280900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G189700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G221000.1 No alias E3 ubiquitin ligase *(XERICO) 0.02 Orthogroups_2024-Update
Solyc05g010170 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.03 Orthogroups_2024-Update
Solyc08g081370 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G63840.1) 0.03 Orthogroups_2024-Update
Sopen04g024160 No alias Ring finger domain 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 76 120
No external refs found!