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  5. Solyc04g054760

Solyc04g054760


Description : senescence-associated family protein (DUF581) (AHRD V3.3 *** AT1G22160.1)


Gene families : OG_42_0000100 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g054760
Cluster HCCA clusters: Cluster_290

Target Alias Description ECC score Gene Family Method Actions
A4A49_14378 No alias hypothetical protein 0.03 Orthogroups_2024-Update
At1g78020 No alias F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8] 0.02 Orthogroups_2024-Update
GRMZM2G036286 No alias Protein of unknown function (DUF581) 0.03 Orthogroups_2024-Update
HORVU6Hr1G031340.3 No alias regulatory protein *(FLZ) of SnRK1 complex 0.03 Orthogroups_2024-Update
PSME_00016396-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Seita.7G215200.1 No alias regulatory protein *(FLZ) of SnRK1 complex 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007650 Zf-FLZ_dom 74 122
No external refs found!