Solyc04g063290

Description : 40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU)

Gene families : OG_42_0002117 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002117_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc04g063290
Cluster	HCCA clusters: Cluster_102

Target	Alias	Description	ECC score	Gene Family Method
67484	No alias	Ribosomal protein S5 family protein	0.19	Orthogroups_2024-Update
A4A49_17312	No alias	40s ribosomal protein s2-4	0.11	Orthogroups_2024-Update
AC210013.4_FG019	No alias	Ribosomal protein S5 family protein	0.16	Orthogroups_2024-Update
At1g58380	No alias	At1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6]	0.08	Orthogroups_2024-Update
Bradi1g04660	No alias	Ribosomal protein S5 family protein	0.1	Orthogroups_2024-Update
Bradi1g54270	No alias	Ribosomal protein S5 family protein	0.11	Orthogroups_2024-Update
Brara.A02366.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.19	Orthogroups_2024-Update
Brara.C02137.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.22	Orthogroups_2024-Update
Brara.E00249.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.27	Orthogroups_2024-Update
Cre01.g039250	No alias	Ribosomal protein S5 family protein	0.06	Orthogroups_2024-Update
GRMZM2G092663	No alias	Ribosomal protein S5 family protein	0.02	Orthogroups_2024-Update
Glyma.02G085300	No alias	Ribosomal protein S5 family protein	0.13	Orthogroups_2024-Update
Glyma.05G239000	No alias	Ribosomal protein S5 family protein	0.06	Orthogroups_2024-Update
HORVU3Hr1G086050.2	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.16	Orthogroups_2024-Update
HORVU5Hr1G109910.2	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Kfl00142_0100	kfl00142_0100_v1.1	(at3g57490 : 392.0) Ribosomal protein S5 family protein;...	0.07	Orthogroups_2024-Update
LOC_Os03g59310	No alias	ribosomal protein, putative, expressed	0.03	Orthogroups_2024-Update
Mp5g04380.1	No alias	component RPS2 of SSU proteome	0.07	Orthogroups_2024-Update
Mp5g05010.1	No alias	component RPS2 of SSU proteome	0.13	Orthogroups_2024-Update
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.16	Orthogroups_2024-Update
PSME_00012533-RA	No alias	(at3g57490 : 398.0) Ribosomal protein S5 family protein;...	0.04	Orthogroups_2024-Update
PSME_00031543-RA	No alias	(at3g57490 : 396.0) Ribosomal protein S5 family protein;...	0.05	Orthogroups_2024-Update
Potri.006G052400	No alias	Ribosomal protein S5 family protein	0.1	Orthogroups_2024-Update
Pp1s10_190V6	No alias	40s ribosomal protein	0.1	Orthogroups_2024-Update
Pp1s274_5V6	No alias	40s ribosomal protein	0.12	Orthogroups_2024-Update
Pp1s400_15V6	No alias	40s ribosomal protein	0.15	Orthogroups_2024-Update
Pp1s411_32V6	No alias	40s ribosomal protein	0.02	Orthogroups_2024-Update
Seita.2G079700.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Seita.9G044700.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.22	Orthogroups_2024-Update
Sobic.001G046100.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.36	Orthogroups_2024-Update
Sobic.001G046300.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.34	Orthogroups_2024-Update
Sopen04g026210	No alias	Ribosomal protein S5, N-terminal domain	0.3	Orthogroups_2024-Update
Sopen04g029430	No alias	Ribosomal protein S5, N-terminal domain	0.18	Orthogroups_2024-Update
evm.model.contig_4442.1	No alias	(at1g58684 : 326.0) Ribosomal protein S5 family protein;...	0.3	Orthogroups_2024-Update
evm.model.tig00020961.135	No alias	(at3g57490 : 348.0) Ribosomal protein S5 family protein;...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	170	237
IPR013810	Ribosomal_S5_N	87	151

External Links

No external refs found!

Solyc04g063290

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation