Solyc04g071520

Description : Transcription elongation factor (TFIIS) family protein (AHRD V3.3 *** AT5G09850.5)

Gene families : OG_42_0005448 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005448_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc04g071520
Cluster	HCCA clusters: Cluster_151

Target	Alias	Description	ECC score	Gene Family Method	Actions
Glyma.05G187800	No alias	Transcription elongation factor (TFIIS) family protein	0.02	Orthogroups_2024-Update
Glyma.08G146000	No alias	Transcription elongation factor (TFIIS) family protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004177	aminopeptidase activity	IEP	Predicted GO
MF	GO:0008238	exopeptidase activity	IEP	Predicted GO
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predicted GO
MF	GO:0043130	ubiquitin binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR017923	TFIIS_N	114	162

External Links

No external refs found!