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  5. Solyc04g072270

Solyc04g072270


No description available


Gene families : OG_42_0003644 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003644_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g072270
Cluster HCCA clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
At1g67120 No alias ATPases;nucleotide binding;ATP... 0.04 Orthogroups_2024-Update
Cre03.g161800 No alias ATPases;nucleotide binding;ATP... 0.02 Orthogroups_2024-Update
Glyma.07G035600 No alias ATPases;nucleotide binding;ATP... 0.04 Orthogroups_2024-Update
Kfl00198_0260 kfl00198_0260_v1.1 (at1g67120 : 1570.0) ATPases;nucleotide binding;ATP... 0.02 Orthogroups_2024-Update
LOC_Os10g31856 No alias midasin-related, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s134_120V6 No alias type a von willebrand factor domain-containing protein 0.03 Orthogroups_2024-Update
Seita.9G233700.1 No alias LSU ribosomal large subunit export factor *(MDN1) 0.06 Orthogroups_2024-Update
Sobic.009G173600.1 No alias LSU ribosomal large subunit export factor *(MDN1) 0.02 Orthogroups_2024-Update
evm.model.contig_2088.9 No alias (at1g67120 : 411.0) ATPases;nucleotide binding;ATP... 0.02 Orthogroups_2024-Update
evm.model.tig00000403.82 No alias (at1g67120 : 493.0) ATPases;nucleotide binding;ATP... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!