Solyc04g072550

Description : Transcription termination factor, mitochondrial (AHRD V3.3 *** A0A1D1XYW6_9ARAE)

Gene families : OG_42_0000078 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc04g072550
Cluster	HCCA clusters: Cluster_191

Target	Alias	Description	ECC score	Gene Family Method
Brara.E03356.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
HORVU2Hr1G024310.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
HORVU6Hr1G075340.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
LOC_Os11g09990	No alias	mTERF family protein, expressed	0.03	Orthogroups_2024-Update
Mp1g21970.1	No alias	transcription factor (mTERF)	0.03	Orthogroups_2024-Update
PSME_00024911-RA	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
Seita.4G092000.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.4G094400.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.4G095000.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.002G179800.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.007G114700.3	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0031011	Ino80 complex	IEP	Predicted GO
CC	GO:0033202	DNA helicase complex	IEP	Predicted GO
CC	GO:0044454	nuclear chromosome part	IEP	Predicted GO
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Predicted GO
CC	GO:0097346	INO80-type complex	IEP	Predicted GO
CC	GO:1904949	ATPase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003690	MTERF	128	429

External Links

No external refs found!

Solyc04g072550

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation