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  5. Solyc01g057220

Solyc01g057220


Description : Pectinesterase (AHRD V3.3 *** K4AVT5_SOLLC)


Gene families : OG_42_0000066 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g057220
Cluster HCCA clusters: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
232546 No alias pectin methylesterase PCR fragment F 0.02 Orthogroups_2024-Update
A4A49_03154 No alias putative pectinesterasepectinesterase inhibitor 60 0.03 Orthogroups_2024-Update
A4A49_16804 No alias putative pectinesterasepectinesterase inhibitor 12 0.04 Orthogroups_2024-Update
Bradi2g11860 No alias pectin methylesterase 3 0.03 Orthogroups_2024-Update
Brara.H01276.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.04 Orthogroups_2024-Update
GRMZM2G136106 No alias pectin methylesterase 2 0.03 Orthogroups_2024-Update
HORVU5Hr1G010860.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.03 Orthogroups_2024-Update
LOC_Os08g34900 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
MA_101025g0010 No alias (at5g53370 : 478.0) pectin methylesterase PCR fragment F... 0.03 Orthogroups_2024-Update
MA_10434031g0010 No alias (o04886|pme1_citsi : 471.0) Pectinesterase-1 precursor... 0.03 Orthogroups_2024-Update
MA_2253g0010 No alias (at5g53370 : 385.0) pectin methylesterase PCR fragment F... 0.03 Orthogroups_2024-Update
PSME_00026861-RA No alias (at1g53830 : 537.0) encodes a pectin methylesterase;... 0.03 Orthogroups_2024-Update
Potri.001G162600 No alias pectin methylesterase 3 0.03 Orthogroups_2024-Update
Potri.T148200 No alias pectin methylesterase 3 0.03 Orthogroups_2024-Update
Potri.T151500 No alias pectin methylesterase 3 0.04 Orthogroups_2024-Update
Sopen02g024940 No alias Pectinesterase 0.02 Orthogroups_2024-Update
Sopen07g032320 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA InterProScan predictions
CC GO:0005618 cell wall IEA InterProScan predictions
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006501 Pectinesterase_inhib_dom 50 198
IPR000070 Pectinesterase_cat 272 569
No external refs found!