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  5. Solyc04g074910

Solyc04g074910


Description : 40S ribosomal protein S21 (AHRD V3.3 *** M0ZPV5_SOLTU)


Gene families : OG_42_0002517 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002517_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g074910
Cluster HCCA clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
Brara.I03670.1 No alias component *(eS21) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre03.g203450 No alias Ribosomal protein S21e 0.02 Orthogroups_2024-Update
Mp4g22150.1 No alias component RPS21 of SSU proteome 0.02 Orthogroups_2024-Update
PSME_00047574-RA No alias (at5g27700 : 115.0) Ribosomal protein S21e ; FUNCTIONS... 0.02 Orthogroups_2024-Update
Potri.005G026000 No alias Ribosomal protein S21e 0.03 Orthogroups_2024-Update
Pp1s306_29V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s372_10V6 No alias 40s ribosomal protein 0.04 Orthogroups_2024-Update
Pp1s73_165V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Sobic.001G130301.1 No alias component *(eS21) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sopen04g029860 No alias Ribosomal protein S21e 0.03 Orthogroups_2024-Update
evm.model.contig_2342.3 No alias (p35687|rs21_orysa : 96.3) 40S ribosomal protein S21 -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001931 Ribosomal_S21e 1 76
No external refs found!