Solyc04g076650


Description : Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT1G09890.4)


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g076650
Cluster HCCA clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
Glyma.06G092900 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G010870.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Mp2g13590.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Seita.8G129700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G123300.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen04g030370 No alias Rhamnogalacturonate lyase family 0.03 Orthogroups_2024-Update
Sopen04g030380 No alias Rhamnogalacturonate lyase family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR029411 RG-lyase_III 445 633
IPR010325 Rhamnogal_lyase 5 205
IPR029413 RG-lyase_II 359 431
No external refs found!