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  5. evm.model.tig00000025.20

evm.model.tig00000025.20


Description : (at5g23110 : 208.0) Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 416.0) & (original description: no original description)


Gene families : OG_42_0003403 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003403_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000025.20
Cluster HCCA clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
At5g23110 No alias Zinc finger, C3HC4 type (RING finger) family protein... 0.03 Orthogroups_2024-Update
Bradi5g26017 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 Orthogroups_2024-Update
Brara.C04191.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00074_0170 kfl00074_0170_v1.1 (at5g23110 : 742.0) Zinc finger, C3HC4 type (RING... 0.02 Orthogroups_2024-Update
Pp1s78_164V6 No alias protein binding 0.02 Orthogroups_2024-Update
Seita.3G017200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen02g003520 No alias Zinc finger, C3HC4 type (RING finger) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!