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  5. evm.model.tig00000025.50

evm.model.tig00000025.50


Description : (p35684|rl3_orysj : 551.0) 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2 & (at1g61580 : 541.0) R-protein L3 B (RPL3B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Ribosomal protein L3, conserved site (InterPro:IPR019926), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ribosomal protein 1 (TAIR:AT1G43170.8); Has 2774 Blast hits to 2767 proteins in 966 species: Archae - 329; Bacteria - 1185; Metazoa - 455; Fungi - 168; Plants - 207; Viruses - 1; Other Eukaryotes - 429 (source: NCBI BLink). & (reliability: 1082.0) & (original description: no original description)


Gene families : OG_42_0002422 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002422_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000025.50
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
270706 No alias ribosomal protein 1 0.05 Orthogroups_2024-Update
Bradi4g24610 No alias ribosomal protein 1 0.05 Orthogroups_2024-Update
Bradi4g41680 No alias ribosomal protein 1 0.05 Orthogroups_2024-Update
Brara.B02465.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.I01735.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
GRMZM2G109677 No alias ribosomal protein 1 0.01 Orthogroups_2024-Update
Glyma.20G168100 No alias ribosomal protein 1 0.03 Orthogroups_2024-Update
HORVU4Hr1G019980.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
MA_10432758g0010 No alias (p35684|rl3_orysj : 667.0) 60S ribosomal protein L3... 0.02 Orthogroups_2024-Update
Mp1g18990.1 No alias component RPL3 of LSU proteome component 0.07 Orthogroups_2024-Update
PSME_00049106-RA No alias (p35684|rl3_orysj : 665.0) 60S ribosomal protein L3... 0.02 Orthogroups_2024-Update
Potri.002G066200 No alias ribosomal protein 1 0.02 Orthogroups_2024-Update
Potri.005G194500 No alias ribosomal protein 1 0.03 Orthogroups_2024-Update
Pp1s330_36V6 No alias ribosomal protein l3 0.05 Orthogroups_2024-Update
Pp1s77_207V6 No alias ribosomal protein l3 0.03 Orthogroups_2024-Update
Seita.7G290900.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Seita.8G046000.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.005G050500.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.006G216600.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc01g104590 No alias ribosomal protein L3 0.03 Orthogroups_2024-Update
Sopen01g045870 No alias Ribosomal protein L3 0.02 Orthogroups_2024-Update
Sopen01g047100 No alias Ribosomal protein L3 0.03 Orthogroups_2024-Update
evm.model.contig_2059.33 No alias (at1g61580 : 514.0) R-protein L3 B (RPL3B); FUNCTIONS... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 1 367
No external refs found!