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  5. Solyc04g077060

Solyc04g077060


Description : RNA-binding KH domain protein (AHRD V3.3 *** G7J415_MEDTR)


Gene families : OG_42_0000643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g077060
Cluster HCCA clusters: Cluster_284

Target Alias Description ECC score Gene Family Method Actions
Bradi4g34220 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.04G088100 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 400 466
IPR004088 KH_dom_type_1 173 240
IPR004088 KH_dom_type_1 598 661
IPR004088 KH_dom_type_1 313 364
IPR004088 KH_dom_type_1 40 91
No external refs found!