evm.model.tig00000042.65

Description : (at3g54860 : 129.0) Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.; ATVPS33; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 45 (TAIR:AT1G77140.1); Has 1433 Blast hits to 1411 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 612; Fungi - 387; Plants - 135; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)

Gene families : OG_42_0004651 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004651_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Cyanophora release: evm.model.tig00000042.65
Cluster	HCCA clusters: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method	Actions
Kfl00385_0120	kfl00385_0120_v1.1	(at3g54860 : 172.0) Homologous to yeast VPS33. Forms a...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006904	vesicle docking involved in exocytosis	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	InterProScan predictions
BP	GO:0022406	membrane docking	None	Extended
BP	GO:0048278	vesicle docking	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0140029	exocytic process	None	Extended
BP	GO:0140056	organelle localization by membrane tethering	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Predicted GO
BP	GO:0000725	recombinational repair	IEP	Predicted GO
MF	GO:0001871	pattern binding	IEP	Predicted GO
BP	GO:0006302	double-strand break repair	IEP	Predicted GO
BP	GO:0006310	DNA recombination	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030247	polysaccharide binding	IEP	Predicted GO
MF	GO:2001070	starch binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001619	Sec1-like	32	434
IPR001619	Sec1-like	454	604

External Links

No external refs found!

evm.model.tig00000042.65

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation