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  5. Solyc04g077990

Solyc04g077990


Description : LOB domain-containing protein, putative (AHRD V3.3 *** B9SND0_RICCO)


Gene families : OG_42_0000544 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000544_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g077990
Cluster HCCA clusters: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Glyma.07G091600 No alias LOB domain-containing protein 41 0.03 Orthogroups_2024-Update
Glyma.13G046300 No alias LOB domain-containing protein 41 0.05 Orthogroups_2024-Update
Glyma.17G162000 No alias LOB domain-containing protein 38 0.03 Orthogroups_2024-Update
MA_122595g0010 No alias (at3g49940 : 211.0) LOB domain-containing protein 38... 0.03 Orthogroups_2024-Update
MA_19934g0010 No alias (at1g67100 : 194.0) LOB domain-containing protein 40... 0.03 Orthogroups_2024-Update
MA_55585g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00021971-RA No alias (at1g67100 : 181.0) LOB domain-containing protein 40... 0.05 Orthogroups_2024-Update
PSME_00041119-RA No alias (at5g67420 : 212.0) LOB domain-containing protein 37... 0.04 Orthogroups_2024-Update
Potri.012G056800 No alias LOB domain-containing protein 41 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006120 mitochondrial electron transport, NADH to ubiquinone IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 2 101
No external refs found!