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  5. Solyc04g078310

Solyc04g078310


Description : cyclin A3_1


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g078310
Cluster HCCA clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
A4A49_05961 No alias g2mitotic-specific cyclin-1 0.03 Orthogroups_2024-Update
A4A49_20167 No alias cyclin-b2-4 0.03 Orthogroups_2024-Update
A4A49_43169 No alias cyclin-a3-2 0.03 Orthogroups_2024-Update
At1g20590 No alias Cyclin-B2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM91] 0.04 Orthogroups_2024-Update
At1g77390 No alias TAM [Source:UniProtKB/TrEMBL;Acc:A0A178WDV8] 0.03 Orthogroups_2024-Update
At2g17620 No alias Cyclin-B2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39068] 0.03 Orthogroups_2024-Update
At3g11520 No alias Cyclin-B1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q39069] 0.03 Orthogroups_2024-Update
Brara.C00237.1 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
Brara.E01867.1 No alias regulatory protein *(TAM) involved in metaphase to... 0.02 Orthogroups_2024-Update
Brara.H00423.1 No alias regulatory protein *(CYCA) of cell cycle 0.04 Orthogroups_2024-Update
Brara.H02508.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre03.g207900 No alias Cyclin A2;4 0.02 Orthogroups_2024-Update
Cre08.g370401 No alias CYCLIN B2;4 0.02 Orthogroups_2024-Update
Glyma.01G159700 No alias Cyclin B2;3 0.05 Orthogroups_2024-Update
Glyma.02G277600 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.03G123600 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.04G001100 No alias Cyclin B2;3 0.03 Orthogroups_2024-Update
Glyma.04G043600 No alias Cyclin A3;1 0.08 Orthogroups_2024-Update
Glyma.04G071600 No alias mitotic-like cyclin 3B from Arabidopsis 0.03 Orthogroups_2024-Update
Glyma.04G246600 No alias Cyclin A1;1 0.03 Orthogroups_2024-Update
Glyma.06G000600 No alias Cyclin B2;3 0.06 Orthogroups_2024-Update
Glyma.06G043900 No alias CYCLIN A3;4 0.06 Orthogroups_2024-Update
Glyma.06G116100 No alias Cyclin A1;1 0.04 Orthogroups_2024-Update
Glyma.07G034100 No alias Cyclin A2;4 0.03 Orthogroups_2024-Update
Glyma.11G084500 No alias Cyclin B2;3 0.04 Orthogroups_2024-Update
Glyma.13G031500 No alias Cyclin A1;1 0.07 Orthogroups_2024-Update
Glyma.14G037100 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.19G127200 No alias Cyclin family protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G018820.2 No alias regulatory protein *(CYCA) of cell cycle 0.03 Orthogroups_2024-Update
Kfl00112_0070 kfl00112_0070_v1.... (at1g80370 : 326.0) Cyclin A2;4 (CYCA2;4); CONTAINS... 0.02 Orthogroups_2024-Update
LOC_Os01g59120 No alias cyclin, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g51110 No alias cyclin, putative, expressed 0.02 Orthogroups_2024-Update
MA_28323g0010 No alias (at5g11300 : 355.0) mitotic-like cyclin, core cell cycle... 0.06 Orthogroups_2024-Update
MA_6619g0010 No alias (at1g44110 : 409.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.05 Orthogroups_2024-Update
MA_88982g0010 No alias (at5g11300 : 380.0) mitotic-like cyclin, core cell cycle... 0.06 Orthogroups_2024-Update
Mp2g25500.1 No alias cyclin (CYCA) 0.02 Orthogroups_2024-Update
Mp5g10030.1 No alias cyclin (CYCB) 0.02 Orthogroups_2024-Update
PSME_00018743-RA No alias (p30278|ccnb2_medsa : 274.0) G2/mitotic-specific... 0.02 Orthogroups_2024-Update
Potri.018G034100 No alias mitotic-like cyclin 3B from Arabidopsis 0.04 Orthogroups_2024-Update
Sopen03g039320 No alias Cyclin, N-terminal domain 0.04 Orthogroups_2024-Update
Sopen04g031900 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update
Sopen04g036020 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update
Sopen06g024200 No alias Cyclin, N-terminal domain 0.11 Orthogroups_2024-Update
Sopen12g030450 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update
Sopen12g030490 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update
evm.model.contig_554.3 No alias (q40671|ccnb2_orysa : 240.0) G2/mitotic-specific... 0.02 Orthogroups_2024-Update
evm.model.tig00000769.38 No alias (at1g76310 : 252.0) core cell cycle genes; CYCLIN B2;4... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 234 356
IPR006671 Cyclin_N 103 231
No external refs found!