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Description : (at1g05460 : 147.0) Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.; SILENCING DEFECTIVE (SDE3); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: virus induced gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, UvrD/REP type (InterPro:IPR000212); BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT5G47010.1); Has 8827 Blast hits to 7137 proteins in 1206 species: Archae - 219; Bacteria - 2402; Metazoa - 1784; Fungi - 1431; Plants - 666; Viruses - 219; Other Eukaryotes - 2106 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description)
Gene families : OG_42_0003655 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003655_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Cyanophora release: evm.model.tig00000144.126 | |
| Cluster | HCCA clusters: Cluster_44 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g05460 | No alias | Probable RNA helicase SDE3... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001505 | regulation of neurotransmitter levels | IEP | Predicted GO |
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0004112 | cyclic-nucleotide phosphodiesterase activity | IEP | Predicted GO |
| MF | GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | IEP | Predicted GO |
| MF | GO:0004375 | glycine dehydrogenase (decarboxylating) activity | IEP | Predicted GO |
| MF | GO:0005215 | transporter activity | IEP | Predicted GO |
| MF | GO:0005216 | ion channel activity | IEP | Predicted GO |
| BP | GO:0006353 | DNA-templated transcription, termination | IEP | Predicted GO |
| BP | GO:0006544 | glycine metabolic process | IEP | Predicted GO |
| BP | GO:0006546 | glycine catabolic process | IEP | Predicted GO |
| BP | GO:0006811 | ion transport | IEP | Predicted GO |
| BP | GO:0007165 | signal transduction | IEP | Predicted GO |
| MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0009063 | cellular amino acid catabolic process | IEP | Predicted GO |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0009071 | serine family amino acid catabolic process | IEP | Predicted GO |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0009187 | cyclic nucleotide metabolic process | IEP | Predicted GO |
| BP | GO:0009190 | cyclic nucleotide biosynthetic process | IEP | Predicted GO |
| MF | GO:0015075 | ion transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015267 | channel activity | IEP | Predicted GO |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | Predicted GO |
| CC | GO:0016020 | membrane | IEP | Predicted GO |
| BP | GO:0016054 | organic acid catabolic process | IEP | Predicted GO |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Predicted GO |
| MF | GO:0016642 | oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0016829 | lyase activity | IEP | Predicted GO |
| MF | GO:0016849 | phosphorus-oxygen lyase activity | IEP | Predicted GO |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0022838 | substrate-specific channel activity | IEP | Predicted GO |
| MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0042133 | neurotransmitter metabolic process | IEP | Predicted GO |
| BP | GO:0042135 | neurotransmitter catabolic process | IEP | Predicted GO |
| MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | Predicted GO |
| BP | GO:0042737 | drug catabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
| BP | GO:0044282 | small molecule catabolic process | IEP | Predicted GO |
| BP | GO:0046395 | carboxylic acid catabolic process | IEP | Predicted GO |
| BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
| BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
| BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |
| BP | GO:0065007 | biological regulation | IEP | Predicted GO |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predicted GO |
| BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |