1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g079150

Solyc04g079150


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HVN1_POPTR)


Gene families : OG_42_0008373 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008373_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g079150
Cluster HCCA clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Seita.1G327400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen04g032760 No alias PPR repeat family 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 398 457
IPR002885 Pentatricopeptide_repeat 484 512
IPR002885 Pentatricopeptide_repeat 302 352
IPR002885 Pentatricopeptide_repeat 233 281
No external refs found!