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  5. evm.model.tig00000169.6

evm.model.tig00000169.6


Description : (p25387|gblp_chlre : 478.0) Guanine nucleotide-binding protein subunit beta-like protein - Chlamydomonas reinhardtii & (at1g48630 : 426.0) Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1B has no phenotype on its own and probably acts redundantly with RACK1A and RACK1C.; receptor for activated C kinase 1B (RACK1B_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1C (TAIR:AT3G18130.1); Has 89864 Blast hits to 37441 proteins in 950 species: Archae - 80; Bacteria - 10219; Metazoa - 35696; Fungi - 20361; Plants - 11462; Viruses - 9; Other Eukaryotes - 12037 (source: NCBI BLink). & (reliability: 850.0) & (original description: no original description)


Gene families : OG_42_0002129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000169.6
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
266532 No alias receptor for activated C kinase 1B 0.03 Orthogroups_2024-Update
At3g18130 No alias Receptor for activated C kinase 1C... 0.01 Orthogroups_2024-Update
Bradi2g17350 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g46840 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A02955.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.E02380.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.H02438.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.I04799.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Glyma.05G243800 No alias receptor for activated C kinase 1C 0.03 Orthogroups_2024-Update
Glyma.08G051600 No alias receptor for activated C kinase 1C 0.02 Orthogroups_2024-Update
HORVU1Hr1G083710.2 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
HORVU3Hr1G063670.2 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
LOC_Os01g49290 No alias WD repeat-containing protein, putative, expressed 0.01 Orthogroups_2024-Update
Mp3g15630.1 No alias associated component RACK1 of SSU proteome 0.05 Orthogroups_2024-Update
PSME_00054687-RA No alias (o24076|gblp_medsa : 541.0) Guanine nucleotide-binding... 0.02 Orthogroups_2024-Update
Potri.015G041600 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s15_197V6 No alias receptor of activated protein kinase c component of 40s... 0.03 Orthogroups_2024-Update
Seita.3G155500.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Seita.5G275300.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.01 Orthogroups_2024-Update
Sobic.009G223300.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Solyc03g119040 No alias LeArcA2 protein containing 7 WD40 repeats 0.05 Orthogroups_2024-Update
Solyc06g069010 No alias LeArcA1 protein 0.03 Orthogroups_2024-Update
Sopen03g037930 No alias WD domain, G-beta repeat 0.03 Orthogroups_2024-Update
Sopen06g026300 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
Sopen12g020110 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
BP GO:0016032 viral process IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
CC GO:0019031 viral envelope IEP Predicted GO
BP GO:0019058 viral life cycle IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
CC GO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
CC GO:0036338 viral membrane IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044403 symbiont process IEP Predicted GO
BP GO:0044419 interspecies interaction between organisms IEP Predicted GO
CC GO:0044423 virion part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 218 253
IPR001680 WD40_repeat 279 303
IPR001680 WD40_repeat 179 213
IPR001680 WD40_repeat 98 134
IPR001680 WD40_repeat 11 45
IPR001680 WD40_repeat 59 92
No external refs found!