evm.model.tig00000217.21

Description : (at5g42790 : 172.0) encodes a protein with extensive homology to the largest subunit of the multicatalytic proteinase complex (proteasome). Negatively regulates thiol biosynthesis and arsenic tolerance.; proteasome alpha subunit F1 (PAF1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to arsenic, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit F2 (TAIR:AT1G47250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p52428|psa1_orysa : 164.0) Proteasome subunit alpha type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit alpha-6) (Proteasome component C2) - Oryza sativa (Rice) & (reliability: 344.0) & (original description: no original description)

Gene families : OG_42_0004453 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004453_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Cyanophora release: evm.model.tig00000217.21
Cluster	HCCA clusters: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
A4A49_12781	No alias	proteasome subunit alpha type-1-a	0.05	Orthogroups_2024-Update
A4A49_42270	No alias	proteasome subunit alpha type-1-a	0.02	Orthogroups_2024-Update
At1g47250	No alias	Proteasome subunit alpha type-1-B...	0.02	Orthogroups_2024-Update
Bradi3g03040	No alias	proteasome alpha subunit F1	0.02	Orthogroups_2024-Update
Brara.B02476.1	No alias	alpha-type-6 component *(PAF) of 26S proteasome & EC_3.4...	0.02	Orthogroups_2024-Update
Brara.I01753.1	No alias	alpha-type-6 component *(PAF) of 26S proteasome & EC_3.4...	0.02	Orthogroups_2024-Update
Kfl00039_0350	kfl00039_0350_v1.1	(at1g47250 : 303.0) Encodes 20S proteasome subunit PAF2...	0.02	Orthogroups_2024-Update
Mp4g13080.1	No alias	component alpha type-6 of 26S proteasome	0.02	Orthogroups_2024-Update
Potri.005G229200	No alias	proteasome alpha subunit F1	0.05	Orthogroups_2024-Update
Pp1s4_331V6	No alias	proteasome subunit alpha type 1	0.01	Orthogroups_2024-Update
Seita.1G096200.1	No alias	alpha-type-6 component *(PAF) of 26S proteasome & EC_3.4...	0.06	Orthogroups_2024-Update
Sobic.004G032000.1	No alias	alpha-type-6 component *(PAF) of 26S proteasome & EC_3.4...	0.04	Orthogroups_2024-Update
Sopen04g034180	No alias	Proteasome subunit	0.04	Orthogroups_2024-Update
evm.model.contig_711.1	No alias	(at5g42790 : 286.0) encodes a protein with extensive...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	IEA	InterProScan predictions
MF	GO:0004298	threonine-type endopeptidase activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	InterProScan predictions
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	InterProScan predictions
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEA	InterProScan predictions
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEA	InterProScan predictions
MF	GO:0070003	threonine-type peptidase activity	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IEP	Predicted GO
CC	GO:0000229	cytoplasmic chromosome	IEP	Predicted GO
CC	GO:0000262	mitochondrial chromosome	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
BP	GO:0006479	protein methylation	IEP	Predicted GO
BP	GO:0006480	N-terminal protein amino acid methylation	IEP	Predicted GO
BP	GO:0007005	mitochondrion organization	IEP	Predicted GO
BP	GO:0008213	protein alkylation	IEP	Predicted GO
MF	GO:0015035	protein disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Predicted GO
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Predicted GO
BP	GO:0032259	methylation	IEP	Predicted GO
BP	GO:0043414	macromolecule methylation	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	30	158
IPR000426	Proteasome_asu_N	6	28

External Links

No external refs found!

evm.model.tig00000217.21

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation