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  5. Solyc04g080110

Solyc04g080110


Description : Accumulation of photosystem 2 (AHRD V3.3 *-* A0A068REC1_9MAGN)


Gene families : OG_42_0001137 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001137_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g080110
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
HORVU2Hr1G098680.2 No alias organelle RNA splicing factor *(APO) 0.02 Orthogroups_2024-Update
MA_172057g0010 No alias (at5g61930 : 386.0) ACCUMULATION OF PHOTOSYSTEM ONE 3;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR023342 APO_dom 100 144
IPR023342 APO_dom 7 74
No external refs found!