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  5. Solyc04g080800

Solyc04g080800


Description : Ribosomal RNA small subunit methyltransferase I (AHRD V3.3 *** A0A0B0MFQ4_GOSAR)


Gene families : OG_42_0007536 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007536_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g080800
Cluster HCCA clusters: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
Seita.9G261700.1 No alias RsmI-type rRNA methyltransferase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0008152 metabolic process IEA InterProScan predictions
MF GO:0008168 methyltransferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Predicted GO
BP GO:0046434 organophosphate catabolic process IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0052646 alditol phosphate metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000878 4pyrrol_Mease 125 323
No external refs found!